About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22375-
Paelopatides22378-
Paelopatides22379REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22380ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides22381CENTROMERE PROTEIN I
Paelopatides22382YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER
Paelopatides22383AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE
Paelopatides22384YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER
Paelopatides22385GAG-RELATED PROTEIN
Paelopatides22386ENDONUCLEASE
Paelopatides22387UNCHARACTERIZED
Paelopatides22388TYROSINE-PROTEIN KINASE
Paelopatides22389-
Paelopatides22390ENZYMATIC POLYPROTEIN-RELATED
Paelopatides22391-
Paelopatides22392ENDONUCLEASE-RELATED
Paelopatides22393-
Paelopatides22394PROTEIN CBG26694
Paelopatides22395PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides22396PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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