About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22397PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides22398-
Paelopatides22399-
Paelopatides22400REVERSE TRANSCRIPTASES
Paelopatides22401-
Paelopatides22402U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN
Paelopatides22403ENDONUCLEASE-RELATED
Paelopatides22412RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides22413PROTEIN CBG26694
Paelopatides22414-
Paelopatides22415PROPERDIN
Paelopatides22416SEMAPHORIN
Paelopatides22417SEMAPHORIN
Paelopatides22418SWI/SNF COMPLEX-RELATED
Paelopatides22419-
Paelopatides22420ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides22421-
Paelopatides22422SWI/SNF COMPLEX-RELATED
Paelopatides22423UNCHARACTERIZED
Paelopatides22424ALTERNATIVE OXIDASE
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