About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22470ADIPOCYTE-SPECIFIC PROTEIN 4-RELATED
Paelopatides22471-
Paelopatides22472-
Paelopatides22473-
Paelopatides22474-
Paelopatides22475-
Paelopatides22476-
Paelopatides22477-
Paelopatides22478CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22479MTG8 ETO EIGHT TWENTY ONE PROTEIN
Paelopatides22480FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22481-
Paelopatides22482E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED
Paelopatides22483NUCLEAR HORMONE RECEPTOR
Paelopatides22484ALDOSE-1-EPIMERASE
Paelopatides22485DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides22486TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A
Paelopatides22487-
Paelopatides22488MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN
Paelopatides22489MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN
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