Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)
Trachythela sp. YZ-2020
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70 | 3563 | 37.5 | 57.88 | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g14813 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
| Clavulariidae_g14814 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
| Clavulariidae_g14815 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g14816 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Clavulariidae_g14817 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14818 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Clavulariidae_g14819 | POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED |
| Clavulariidae_g1482 | RESPIRATORY NITRATE REDUCTASE |
| Clavulariidae_g14820 | TBC1 DOMAIN FAMILY MEMBER 19 |
| Clavulariidae_g14821 | PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR |
| Clavulariidae_g14822 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14823 | |
| Clavulariidae_g14824 | PROTEIN CBG26694 |
| Clavulariidae_g14825 | TOL-PAL SYSTEM PROTEIN TOLA |
| Clavulariidae_g14826 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14827 | CYTOCHROME P450 FAMILY 4 |
| Clavulariidae_g14828 | - |
| Clavulariidae_g14829 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Clavulariidae_g1483 | RIBOSOMAL PROTEIN L2 |
| Clavulariidae_g14830 | OS02G0260700 PROTEIN |
| Clavulariidae_g14831 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
| Clavulariidae_g14832 | EXPRESSED PROTEIN |
| Clavulariidae_g14833 | FAS-ASSOCIATED PROTEIN |
| Clavulariidae_g14834 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Clavulariidae_g14835 | |
| Clavulariidae_g14836 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14837 | MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 |
| Clavulariidae_g14838 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| Clavulariidae_g14839 | |
| Clavulariidae_g1484 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14840 | METHYLTRANSFERASE |
| Clavulariidae_g14841 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g14842 | LD33695P |
| Clavulariidae_g14843 | ACYL-COA SYNTHETASE |
| Clavulariidae_g14844 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g14845 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14846 | ACYL-COA SYNTHETASE |
| Clavulariidae_g14847 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14848 | |
| Clavulariidae_g14849 | |
| Clavulariidae_g1485 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g14850 | |
| Clavulariidae_g14851 | PROTEIN CBG26694 |
| Clavulariidae_g14852 | PROTEIN CBG26694 |
| Clavulariidae_g14853 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| Clavulariidae_g14854 | NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52 |
| Clavulariidae_g14855 | |
| Clavulariidae_g14856 | AMINO ACID TRANSPORTER |
| Clavulariidae_g14857 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Clavulariidae_g14858 | THAP DOMAIN PROTEIN |
