About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.

Classification

Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)

Original Name

Trachythela sp. YZ-2020


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70 356337.557.8835,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14723RETROTRANSPOSON
Clavulariidae_g14724RETROTRANSPOSON
Clavulariidae_g14725ATP-DEPENDENT DNA HELICASE
Clavulariidae_g14726REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14727
Clavulariidae_g14728PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14729ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Clavulariidae_g1473
Clavulariidae_g14730ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Clavulariidae_g14731POLY A POLYMERASE CID PAP -RELATED
Clavulariidae_g14732CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g14733RADIAL SPOKE HEAD 1 HOMOLOG
Clavulariidae_g14734CELL FATE DETERMINING PROTEIN MAB21-RELATED
Clavulariidae_g14735
Clavulariidae_g14736SOLUTE CARRIER FAMILY 10 MEMBER 7
Clavulariidae_g14737
Clavulariidae_g14738THAP DOMAIN PROTEIN
Clavulariidae_g14739TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1474CELL FATE DETERMINING PROTEIN MAB21-RELATED
Clavulariidae_g14740ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g14741LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g14742
Clavulariidae_g14743
Clavulariidae_g14744
Clavulariidae_g14745PROTEIN CBG26694
Clavulariidae_g14746PROTEIN CBG26694
Clavulariidae_g14747
Clavulariidae_g14748SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g14749ZGC:195170
Clavulariidae_g1475CELL FATE DETERMINING PROTEIN MAB21-RELATED
Clavulariidae_g14750
Clavulariidae_g14751REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14752REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14753ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14754PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14755
Clavulariidae_g14756INTELECTIN
Clavulariidae_g14757
Clavulariidae_g14758EXPRESSED PROTEIN
Clavulariidae_g14759
Clavulariidae_g1476CELL FATE DETERMINING PROTEIN MAB21-RELATED
Clavulariidae_g14760
Clavulariidae_g14761REVERSE TRANSCRIPTASES
Clavulariidae_g14762CYTOKINE RECEPTOR
Clavulariidae_g14763REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14764
Clavulariidae_g14765PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Clavulariidae_g14766
Clavulariidae_g14767PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g14768ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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