About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Classification

Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)

Original Name

Trachythela sp. YZ-2020

Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70 356337.557.8835,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14769PROTEIN CBG26694
Clavulariidae_g1477REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14770
Clavulariidae_g14771VOLTAGE-GATED POTASSIUM CHANNEL
Clavulariidae_g14772ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14773-
Clavulariidae_g14774AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B
Clavulariidae_g14775
Clavulariidae_g14776
Clavulariidae_g14777LD33804P
Clavulariidae_g14778ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g14779ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g1478METALLOPROTEASE TIKI
Clavulariidae_g14780ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g14781REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14782UNCHARACTERIZED
Clavulariidae_g14783ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g14784IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14785EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP
Clavulariidae_g14786REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14787
Clavulariidae_g14788HEAT SHOCK PROTEIN 70KDA
Clavulariidae_g14789
Clavulariidae_g1479I[[H]] CHANNEL, ISOFORM E
Clavulariidae_g14790SENTRIN/SUMO-SPECIFIC PROTEASE
Clavulariidae_g14791THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g14792ATP-DEPENDENT RNA HELICASE
Clavulariidae_g14793ACROSIN-RELATED
Clavulariidae_g14794REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14795INNER MEMBRANE TRANSPORT PROTEIN YAJR
Clavulariidae_g14796NNMT/PNMT/TEMT FAMILY MEMBER
Clavulariidae_g14797INTRAFLAGELLAR TRANSPORT PROTEIN 74 HOMOLOG
Clavulariidae_g14798
Clavulariidae_g14799
Clavulariidae_g148REVERSE TRANSCRIPTASES
Clavulariidae_g1480
Clavulariidae_g14800REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14801ATP-DEPENDENT DNA HELICASE
Clavulariidae_g14802REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14803PROTEIN CBG26694
Clavulariidae_g14804PROTEIN CBG26694
Clavulariidae_g14805RETROTRANSPOSON
Clavulariidae_g14806INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g14807
Clavulariidae_g14808THAP DOMAIN PROTEIN
Clavulariidae_g14809TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1481I[[H]] CHANNEL, ISOFORM E
Clavulariidae_g14810
Clavulariidae_g14811PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
Clavulariidae_g14812MUCIN 4-RELATED
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