About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22576ENDONUCLEASE
Paelopatides22577-
Paelopatides22579OPSIN
Paelopatides22580HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides22581-
Paelopatides22582-
Paelopatides22583L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides22584-
Paelopatides22585LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN
Paelopatides22586UNCHARACTERIZED
Paelopatides22587PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides22588ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides22589PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides22590NXPE FAMILY MEMBER
Paelopatides22591-
Paelopatides22592INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
Paelopatides22593-
Paelopatides22601ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides22602PROTEIN CBG26694
Paelopatides22603REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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