About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22604-
Paelopatides22605-
Paelopatides22606ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides22607-
Paelopatides2260852 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides22609FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides22610-
Paelopatides22612ATP-DEPENDENT RNA HELICASE DBP3
Paelopatides22613-
Paelopatides22615-
Paelopatides22616REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22617PROTEIN CBG26694
Paelopatides22618ENZYMATIC POLYPROTEIN-RELATED
Paelopatides22619L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides22620-
Paelopatides22621-
Paelopatides22622CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22623-
Paelopatides22624UNCHARACTERIZED
Paelopatides22625TRANSPOSON TY3-I GAG-POL POLYPROTEIN
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