About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22670WD REPEAT DOMAIN 44
Paelopatides22671BUCENTAUR RELATED
Paelopatides22672-
Paelopatides22673INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22674TRANSPOSASE, PUTATIVE-RELATED
Paelopatides22675TRANSPOSASE, PUTATIVE-RELATED
Paelopatides22676-
Paelopatides22677-
Paelopatides22678ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides22681PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
Paelopatides22682-
Paelopatides22683ZINC FINGER PROTEIN
Paelopatides22684-
Paelopatides22686SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED
Paelopatides22687POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides22688TB1 PROTEIN-RELATED
Paelopatides22689PROTEIN CBG26694
Paelopatides22690REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22691HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides22692AP ENDONUCLEASE
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