About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22742CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides22743RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides22744-
Paelopatides22745-
Paelopatides22746PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE
Paelopatides22747BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR
Paelopatides22748-
Paelopatides22749-
Paelopatides22750REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22751HISTIDINE-RICH GLYCOPROTEIN
Paelopatides22752TATA ELEMENT MODULATORY FACTOR TMF1
Paelopatides22753TATA ELEMENT MODULATORY FACTOR TMF1
Paelopatides22754-
Paelopatides22755-
Paelopatides22756PROKARYOTIC DNA TOPOISOMERASE
Paelopatides22757-
Paelopatides22758PROTEIN CCSMST1
Paelopatides22759HISTONE H3
Paelopatides22760TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides22761TNF RECEPTOR ASSOCIATED FACTOR
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