About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides23302PROTEIN CBG26694
Paelopatides23303MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides23304-
Paelopatides23305-
Paelopatides23306-
Paelopatides23308PROTEIN, PUTATIVE-RELATED
Paelopatides23309METALLOPROTEASE INHIBITOR
Paelopatides23310-
Paelopatides23311PHOSPHATIDATE CYTIDYLYLTRANSFERASE
Paelopatides23312-
Paelopatides23313ENDONUCLEASE-RELATED
Paelopatides23314ENZYMATIC POLYPROTEIN-RELATED
Paelopatides23315PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides23316PROPERDIN
Paelopatides23317-
Paelopatides23318FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides23319PROTEIN CBG26694
Paelopatides23320REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides23321BUCENTAUR RELATED
Paelopatides23322MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER
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