About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides23651-
Paelopatides23652SETA BINDING PROTEIN 1
Paelopatides23653PROTEIN CBG26694
Paelopatides23654ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides23655SCLEROSTIN-RELATED
Paelopatides23656L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides23657-
Paelopatides23658ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides23659-
Paelopatides23660REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides23663PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1
Paelopatides23665MUCIN-22
Paelopatides23666FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides23667PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides23668-
Paelopatides23669ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides23670DNA HELICASE RECQ FAMILY MEMBER
Paelopatides23671ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides23672ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides23673-
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