About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides23545RETROTRANSPOSON
Paelopatides23546ENDONUCLEASE-RELATED
Paelopatides23547POL PROTEIN
Paelopatides23548PARANEOPLASTIC ANTIGEN
Paelopatides23549ENDOSULFINE
Paelopatides23550REVERSE TRANSCRIPTASES
Paelopatides23551-
Paelopatides23552TRANSLOCATION PROTEIN SEC62
Paelopatides23553TRANSLOCATION PROTEIN SEC62
Paelopatides23554F-ACTIN-CAPPING PROTEIN SUBUNIT BETA
Paelopatides23555F-ACTIN-CAPPING PROTEIN SUBUNIT BETA
Paelopatides23556DNA LIGASE 1/3 FAMILY MEMBER
Paelopatides23557-
Paelopatides23558REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides23559UNCHARACTERIZED
Paelopatides23560RETROTRANSPOSON
Paelopatides23561RETROTRANSPOSON
Paelopatides23562ZGC:195170
Paelopatides23563SI:CH211-108C17.2-RELATED-RELATED
Paelopatides23564PROTEIN CBG26694
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