About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides23982REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides23983GTP-BINDING
Paelopatides23984GTP-BINDING
Paelopatides23985PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides23986RETROTRANSPOSON
Paelopatides23987ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides23988-
Paelopatides23989ANTIBIOTIC RESISTANCE PROTEIN MCBG
Paelopatides23993EPM2A-INTERACTING PROTEIN 1
Paelopatides23994OSTEOCLAST-STIMULATING FACTOR 1
Paelopatides23995REVERSE TRANSCRIPTASES
Paelopatides23997-
Paelopatides23998-
Paelopatides23999-
Paelopatides24000CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24001CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24002BONUS, ISOFORM C-RELATED
Paelopatides24003NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides24004LEUCINE-RICH REPEAT-CONTAINING PROTEIN 73
Paelopatides24005-
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