About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.

Classification

Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)

Original Name

Trachythela sp. YZ-2020


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70 356337.557.8835,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15263DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g15264DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g15265
Clavulariidae_g15266
Clavulariidae_g15267
Clavulariidae_g15268TRANSPOSASE
Clavulariidae_g15269
Clavulariidae_g1527TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g15270L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g15271ATP-DEPENDENT DNA HELICASE
Clavulariidae_g15272
Clavulariidae_g15273RE74312P
Clavulariidae_g15274LIGAND BINDING DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_6G14370)-RELATED
Clavulariidae_g15275LONG-CHAIN-FATTY-ACID--COA LIGASE
Clavulariidae_g15276UNCHARACTERIZED
Clavulariidae_g15277MITOGEN-ACTIVATED PROTEIN KINASE
Clavulariidae_g15278UNCHARACTERIZED
Clavulariidae_g15279TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1528
Clavulariidae_g15280UNCHARACTERIZED
Clavulariidae_g15281UNCHARACTERIZED
Clavulariidae_g15282THROMBOSPONDIN
Clavulariidae_g15283
Clavulariidae_g15284EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15285REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15286
Clavulariidae_g15287
Clavulariidae_g15288CATION CHANNEL SPERM-ASSOCIATED PROTEIN 3
Clavulariidae_g15289REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1529DNA POLYMERASE
Clavulariidae_g15290THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g15291
Clavulariidae_g15292PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15293RETROTRANSPOSON
Clavulariidae_g15294HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g15295HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g15296
Clavulariidae_g15297
Clavulariidae_g15298S -2-HYDROXY-ACID OXIDASE-RELATED
Clavulariidae_g15299S -2-HYDROXY-ACID OXIDASE-RELATED
Clavulariidae_g153TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g1530INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g15300
Clavulariidae_g153012-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL
Clavulariidae_g15302PROTEIN CBG26694
Clavulariidae_g15303PROTEIN CBG26694
Clavulariidae_g15304ENZYMATIC POLYPROTEIN-RELATED
Clavulariidae_g15305MYND DOMAIN-CONTAINING
Clavulariidae_g15306PROTEIN CBG26694
Clavulariidae_g15307
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