Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)
Trachythela sp. YZ-2020
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70 | 3563 | 37.5 | 57.88 | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g15218 | |
| Clavulariidae_g15219 | |
| Clavulariidae_g1522 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15220 | ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN |
| Clavulariidae_g15221 | RETROTRANSPOSON |
| Clavulariidae_g15222 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g15223 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g15224 | |
| Clavulariidae_g15225 | |
| Clavulariidae_g15226 | |
| Clavulariidae_g15227 | CALRETICULIN AND CALNEXIN |
| Clavulariidae_g15228 | COATOMER SUBUNIT DELTA |
| Clavulariidae_g15229 | |
| Clavulariidae_g1523 | |
| Clavulariidae_g15230 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
| Clavulariidae_g15231 | PROTEIN CBG26694 |
| Clavulariidae_g15232 | PERIOSTIN-RELATED |
| Clavulariidae_g15233 | COILED-COIL DOMAIN-CONTAINING PROTEIN 158 |
| Clavulariidae_g15234 | |
| Clavulariidae_g15235 | DNA REPAIR PROTEIN XRCC2 |
| Clavulariidae_g15236 | DNA REPAIR PROTEIN XRCC2 |
| Clavulariidae_g15237 | DD-GDCA PROTEIN |
| Clavulariidae_g15238 | |
| Clavulariidae_g15239 | STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 |
| Clavulariidae_g1524 | TRANSPOSASE-RELATED |
| Clavulariidae_g15240 | |
| Clavulariidae_g15241 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15242 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Clavulariidae_g15243 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15244 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Clavulariidae_g15245 | |
| Clavulariidae_g15246 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15247 | |
| Clavulariidae_g15248 | REVERSE TRANSCRIPTASES |
| Clavulariidae_g15249 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g1525 | TRANSPOSASE-RELATED |
| Clavulariidae_g15250 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g15251 | |
| Clavulariidae_g15252 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15253 | - |
| Clavulariidae_g15254 | RETROTRANSPOSON |
| Clavulariidae_g15255 | |
| Clavulariidae_g15256 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15257 | SI:CH211-108C17.2-RELATED-RELATED |
| Clavulariidae_g15258 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15259 | |
| Clavulariidae_g1526 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15260 | FLAP ENDONUCLEASE FAMILY MEMBER |
| Clavulariidae_g15261 | |
| Clavulariidae_g15262 | HMG DOMAIN-CONTAINING PROTEIN 3 |
