About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.

Classification

Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)

Original Name

Trachythela sp. YZ-2020


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70 356337.557.8835,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15038
Clavulariidae_g15039
Clavulariidae_g1504PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15040
Clavulariidae_g15041UNCHARACTERIZED
Clavulariidae_g15042RETROTRANSPOSON
Clavulariidae_g15043RETROTRANSPOSON
Clavulariidae_g15044PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15045
Clavulariidae_g15046VERTNIN
Clavulariidae_g15047RETROTRANSPOSON
Clavulariidae_g15048INTRAFLAGELLAR TRANSPORT PROTEIN 43 HOMOLOG
Clavulariidae_g15049PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1505
Clavulariidae_g15050
Clavulariidae_g15051
Clavulariidae_g15052
Clavulariidae_g15053UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g15054ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15055DNA POLYMERASE TYPE-X FAMILY MEMBER
Clavulariidae_g15056CELL DEATH ACTIVATOR CIDE
Clavulariidae_g15057
Clavulariidae_g15058
Clavulariidae_g15059
Clavulariidae_g1506DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15060REVERSE TRANSCRIPTASES
Clavulariidae_g15061CHITINASE
Clavulariidae_g15062CHITINASE
Clavulariidae_g15063TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g15064SI:DKEY-29D5.2
Clavulariidae_g15065COLLAGEN ALPHA
Clavulariidae_g15066HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g15067PROTEIN CBG26694
Clavulariidae_g15068COLLAGEN ALPHA
Clavulariidae_g15069
Clavulariidae_g1507HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g15070FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g15071GLYCOSYLPHOSPHATIDYLINOSITOL PHOSPHOLIPASE D
Clavulariidae_g15072FI24210P1
Clavulariidae_g15073
Clavulariidae_g15074SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL
Clavulariidae_g15075SODIUM/POTASSIUM/CALCIUM EXCHANGER
Clavulariidae_g15076
Clavulariidae_g15077UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1
Clavulariidae_g15078WITH PUTATIVE URIDYL PYROPHOSPHORYLASE-RELATED
Clavulariidae_g15079DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Clavulariidae_g1508IMPORTIN-7, 8, 11
Clavulariidae_g15080PROTEIN ABHD14B-LIKE
Clavulariidae_g15081-
Clavulariidae_g15082ARYLSULFATASE FAMILY MEMBER
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