About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.

Classification

Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)

Original Name

Trachythela sp. YZ-2020


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70 356337.557.8835,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g15128ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15129SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g1513TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g15130-
Clavulariidae_g15131ANKYRIN REPEAT AND MYND DOMAIN PROTEIN 1
Clavulariidae_g15132L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g15133
Clavulariidae_g15134UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g15135REVERSE TRANSCRIPTASES
Clavulariidae_g15136INTELECTIN
Clavulariidae_g15137REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15138
Clavulariidae_g15139BETA-ALANINE-ACTIVATING ENZYME
Clavulariidae_g1514
Clavulariidae_g15140SH2-SH3 ADAPTOR PROTEIN-RELATED
Clavulariidae_g15141
Clavulariidae_g15142
Clavulariidae_g15143UNNAMED PRODUCT
Clavulariidae_g15144UNNAMED PRODUCT
Clavulariidae_g15145
Clavulariidae_g15146REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15147ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15148PROTEIN CBG23806
Clavulariidae_g15149
Clavulariidae_g1515
Clavulariidae_g15150TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g15151
Clavulariidae_g15152VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B
Clavulariidae_g15153PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15154KINASE D-INTERACTING SUBSTRATE OF 220 KDA
Clavulariidae_g15155
Clavulariidae_g15156
Clavulariidae_g15157MONOCARBOXYLATE TRANSPORTER
Clavulariidae_g15158
Clavulariidae_g15159PROTEIN CBG26694
Clavulariidae_g1516PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15160ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15161MONOCARBOXYLATE TRANSPORTER
Clavulariidae_g15162
Clavulariidae_g15163
Clavulariidae_g15164LD33804P
Clavulariidae_g15165CXXC-TYPE ZINC FINGER PROTEIN 1
Clavulariidae_g15166C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g151671,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE
Clavulariidae_g15168ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15169GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
Clavulariidae_g1517EXPRESSED PROTEIN
Clavulariidae_g15170RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g15171
Clavulariidae_g15172GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
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