Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)
Trachythela sp. YZ-2020
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70 | 3563 | 37.5 | 57.88 | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g14994 | |
| Clavulariidae_g14995 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14996 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g14997 | |
| Clavulariidae_g14998 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
| Clavulariidae_g14999 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| Clavulariidae_g15 | SYNAPTOTAGMIN |
| Clavulariidae_g150 | BTB/POZ DOMAIN-CONTAINING |
| Clavulariidae_g1500 | |
| Clavulariidae_g15000 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| Clavulariidae_g15001 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| Clavulariidae_g15002 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15003 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| Clavulariidae_g15004 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15005 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15006 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
| Clavulariidae_g15007 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15008 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g15009 | RGD1565685 PROTEIN |
| Clavulariidae_g1501 | |
| Clavulariidae_g15010 | |
| Clavulariidae_g15011 | |
| Clavulariidae_g15012 | ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE |
| Clavulariidae_g15013 | CWF19, CELL CYCLE CONTROL PROTEIN |
| Clavulariidae_g15014 | KINESIN LIGHT CHAIN |
| Clavulariidae_g15015 | ENDONUCLEASE-RELATED |
| Clavulariidae_g15016 | INTRAFLAGELLAR TRANSPORT PROTEIN 43 HOMOLOG |
| Clavulariidae_g15017 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15018 | |
| Clavulariidae_g15019 | |
| Clavulariidae_g1502 | |
| Clavulariidae_g15020 | |
| Clavulariidae_g15021 | SI:CH211-196P9.1-RELATED |
| Clavulariidae_g15022 | ENDONUCLEASE-RELATED |
| Clavulariidae_g15023 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15024 | |
| Clavulariidae_g15025 | |
| Clavulariidae_g15026 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15027 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15028 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15029 | PROTEIN CBG26694 |
| Clavulariidae_g1503 | HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15030 | PROTECTION OF TELOMERES 1 |
| Clavulariidae_g15031 | MITOCHONDRIAL RIBOSOMAL PROTEIN S31 |
| Clavulariidae_g15032 | UNCHARACTERIZED |
| Clavulariidae_g15033 | L-ASPARAGINASE |
| Clavulariidae_g15034 | SLL0310 PROTEIN |
| Clavulariidae_g15035 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g15036 | TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN |
| Clavulariidae_g15037 | GUANYLATE BINDING PROTEIN |
