About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides26171TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides26172-
Paelopatides26173TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides26174-
Paelopatides26175-
Paelopatides26179-
Paelopatides26180NETRIN RECEPTOR UNC5
Paelopatides26182-
Paelopatides26183SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D
Paelopatides26185-
Paelopatides26186SERINE/ARGININE REPETITIVE MATRIX 2
Paelopatides26187RETINOBLASTOMA-BINDING PROTEIN 6
Paelopatides26188FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides26190ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides26191-
Paelopatides26192FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides26193ENDONUCLEASE-RELATED
Paelopatides26194CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides26195PENTRAXIN
Paelopatides26196REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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