About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides26033FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides26034ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides26035-
Paelopatides26036CARBONIC ANHYDRASE
Paelopatides26041-
Paelopatides26042IONOTROPIC GLUTAMATE RECEPTOR
Paelopatides26043POL PROTEIN
Paelopatides26044ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides26045PARANEOPLASTIC ANTIGEN
Paelopatides26046TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides26047MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides26048REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26049GTP-BINDING
Paelopatides26050REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26051GTP-BINDING
Paelopatides26052-
Paelopatides26053ACYL-COA DEHYDROGENASE
Paelopatides26054-
Paelopatides26055POL PROTEIN
Paelopatides26056ENZYMATIC POLYPROTEIN-RELATED
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