About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides26101-
Paelopatides26102-
Paelopatides26104PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides26105RETROTRANSPOSON
Paelopatides26106-
Paelopatides26107-
Paelopatides26108FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides26109REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26110-
Paelopatides26111GAG-RELATED PROTEIN
Paelopatides26112REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides26113CALCIUM-BINDING PROTEIN 8-RELATED
Paelopatides26114ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides26115DNA POLYMERASE
Paelopatides26116CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides26117-
Paelopatides26118-
Paelopatides26119CADHERIN DOMAIN-CONTAINING PROTEIN
Paelopatides26120DYNEIN HEAVY CHAIN FAMILY PROTEIN
Paelopatides26121ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
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