About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides27969-
Paelopatides27971-
Paelopatides27972-
Paelopatides27973DEOXYHYPUSINE SYNTHASE
Paelopatides27974SPINSTER
Paelopatides27975SPINSTER
Paelopatides27976-
Paelopatides27977ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides27978-
Paelopatides27979POL PROTEIN
Paelopatides27980ENDONUCLEASE-RELATED
Paelopatides27981POL PROTEIN
Paelopatides27982ENDONUCLEASE-RELATED
Paelopatides27983ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides27984GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Paelopatides27985CBP/P300-RELATED
Paelopatides27986-
Paelopatides27987AARF DOMAIN CONTAINING KINASE 2 (PREDICTED)
Paelopatides27988RAB FAMILY
Paelopatides27989LEUCINE-RICH MELANOCYTE DIFFERENTIATION-ASSOCIATED PROTEIN
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