About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28470-
Paelopatides28471PROTEIN CBG26694
Paelopatides28472PROTEIN CBG26694
Paelopatides28473PROTEIN CBG26694
Paelopatides28474REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides284755-HYDROXYTRYPTAMINE RECEPTOR
Paelopatides28476AQUAPORIN OR AQUAGLYCEROPORIN RELATED
Paelopatides28477ACYL-COA DEHYDROGENASE
Paelopatides28478-
Paelopatides28479L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides28480FIMBRIN/PLASTIN
Paelopatides28481FIMBRIN/PLASTIN
Paelopatides28482FIMBRIN/PLASTIN
Paelopatides28483NECTIN-RELATED
Paelopatides28484-
Paelopatides28485FIBRINOGEN ALPHA CHAIN
Paelopatides28486FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides28487-
Paelopatides28488UNCHARACTERIZED
Paelopatides28489REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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