About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28369-
Paelopatides28371POL PROTEIN
Paelopatides28372-
Paelopatides28373ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides28374PROTEIN CBG26694
Paelopatides28375-
Paelopatides28376-
Paelopatides28377CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides28378-
Paelopatides28379SYMPLEKIN-RELATED
Paelopatides28380DPY30-RELATED
Paelopatides28381ADENOSINE/GUANOSINE DIPHOSPHATASE
Paelopatides28382REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides28383DYNEIN LIGHT CHAIN
Paelopatides28384-
Paelopatides28385-
Paelopatides28386ANAPHASE-PROMOTING COMPLEX SUBUNIT 2
Paelopatides28387EPM2A-INTERACTING PROTEIN 1
Paelopatides28388EPM2A-INTERACTING PROTEIN 1
Paelopatides28389-
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