About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28553IRE1-RELATED
Paelopatides28554UNCHARACTERIZED
Paelopatides28555CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides28556AP ENDONUCLEASE
Paelopatides28558BUCENTAUR RELATED
Paelopatides28559TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides28560-
Paelopatides28561-
Paelopatides28562SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides28563BUCENTAUR RELATED
Paelopatides28564L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides28565TORSIN-1A-INTERACTING PROTEIN
Paelopatides28566CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides28567PROTEIN CBG26694
Paelopatides28568TORSIN
Paelopatides28569ENDONUCLEASE-RELATED
Paelopatides28570POL PROTEIN
Paelopatides28571PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides28572PROTEIN CBG26694
Paelopatides28573ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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