About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28574ENDONUCLEASE-RELATED
Paelopatides28575ENZYMATIC POLYPROTEIN-RELATED
Paelopatides28576ATAXIN-3-RELATED
Paelopatides28577MITOCHONDRIAL RIBOSOMAL PROTEIN S18B
Paelopatides28578MITOCHONDRIAL RIBOSOMAL PROTEIN S18
Paelopatides28579REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides28580ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides28581PROLYL-TRNA SYNTHETASE
Paelopatides28582GLUTAMINE-TRNA LIGASE
Paelopatides28583PROLYL-TRNA SYNTHETASE
Paelopatides28584GLUTAMINE-TRNA LIGASE
Paelopatides28585GLUTAMINE-TRNA LIGASE
Paelopatides28586REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides28587REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides28588-
Paelopatides28589ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides28590-
Paelopatides28591SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
Paelopatides28592EPM2A-INTERACTING PROTEIN 1
Paelopatides28593REVERSE TRANSCRIPTASES
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