About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides28616UNCHARACTERIZED
Paelopatides28617REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides28618ALPHA-GLUCOSIDASE
Paelopatides28619SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
Paelopatides28620FATTY ACID ACYL TRANSFERASE-RELATED
Paelopatides28621UNCHARACTERIZED
Paelopatides28622CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
Paelopatides28623LIM/HOMEOBOX PROTEIN LHX
Paelopatides28624-
Paelopatides28625SH3 DOMAIN-CONTAINING
Paelopatides28626ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides28627ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides28628REVERSE TRANSCRIPTASES
Paelopatides28629-
Paelopatides28630ZINC-FINGER PROTEIN NOLZ1-RELATED
Paelopatides28631-
Paelopatides28632SPONDIN
Paelopatides28633TRANSCRIPTION FACTOR E2F
Paelopatides28634ZINC FINGER PROTEIN
Paelopatides28635ZINC FINGER PROTEIN
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