About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30314-
Paelopatides30315SI:CH211-196P9.1-RELATED
Paelopatides30316-
Paelopatides30317POL PROTEIN
Paelopatides30318-
Paelopatides30319CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides30320SUZ DOMAIN-CONTAINING PROTEIN 1
Paelopatides30321CDNA SEQUENCE BC021608
Paelopatides30322CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides30323PROTEIN CBG26694
Paelopatides30324PROTEIN CBG26694
Paelopatides30325ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides30326RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
Paelopatides30327BETA-GALACTOSIDASE RELATED
Paelopatides30328PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED
Paelopatides30329CALCIUM BINDING PROTEINS
Paelopatides30330UPF0538 FAMILY MEMBER
Paelopatides30331-
Paelopatides30332STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Paelopatides30333STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
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