About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30211C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
Paelopatides30212C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
Paelopatides30213-
Paelopatides30214-
Paelopatides30215-
Paelopatides30217-
Paelopatides30218TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
Paelopatides30219REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30220ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides30221RETROTRANSPOSON
Paelopatides30222-
Paelopatides30223ACETYLGLUCOSAMINYLTRANSFERASE
Paelopatides30224EXPRESSED PROTEIN
Paelopatides30225-
Paelopatides30226-
Paelopatides30227-
Paelopatides30228-
Paelopatides30229APPLE DOMAIN-CONTAINING PROTEIN
Paelopatides30230FRUCTOSE-BISPHOSPHATE ALDOLASE
Paelopatides30231PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED
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