About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30191PROTEIN CBG26694
Paelopatides30192PEPTIDASE S8
Paelopatides30193PEPTIDASE S8
Paelopatides30194MATRIX METALLOPROTEINASE
Paelopatides30195MATRIX METALLOPROTEINASE
Paelopatides30196ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides30197CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides30198POL PROTEIN
Paelopatides30199-
Paelopatides30200-
Paelopatides30201TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides30202-
Paelopatides30203PROTEIN CBG26694
Paelopatides30204TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides30205-
Paelopatides30206ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides30207ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides30208IDURONATE 2-SULFATASE
Paelopatides30209-
Paelopatides30210-
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