About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30467DEOXYRIBONUCLEASE
Paelopatides30468AGAP008228-PA
Paelopatides30469-
Paelopatides30470BUCENTAUR RELATED
Paelopatides30471WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED
Paelopatides30472REVERSE TRANSCRIPTASES
Paelopatides30473POL PROTEIN
Paelopatides30474ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides30475FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides30476ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides304772-OXOGLUTARATE DEHYDROGENASE
Paelopatides30478-
Paelopatides30479RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1
Paelopatides30480RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1
Paelopatides30481SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED
Paelopatides30482REVERSE TRANSCRIPTASE
Paelopatides30483-
Paelopatides30484REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30485REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30486-
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