About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30551-
Paelopatides30552-
Paelopatides30553PROTEIN CBG26694
Paelopatides30554-
Paelopatides30555-
Paelopatides30556NOTCH LIGAND FAMILY MEMBER
Paelopatides30557SLIT HOMOLOG
Paelopatides30558CRUMBS FAMILY MEMBER
Paelopatides30559NOTCH LIGAND FAMILY MEMBER
Paelopatides30560PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides30561PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides30562RETROTRANSPOSON
Paelopatides30563NETRIN RECEPTOR UNC5
Paelopatides30564-
Paelopatides30565ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides30566-
Paelopatides30567CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8
Paelopatides30568CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8
Paelopatides30569-
Paelopatides30570MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
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