About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30591-
Paelopatides30592PROTEIN CBG26694
Paelopatides30593ENDONUCLEASE-RELATED
Paelopatides30594L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides30595-
Paelopatides30596PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides30597-
Paelopatides30598PROTEIN CBG26694
Paelopatides30599PHOSPHOLIPASE A-2-ACTIVATING PROTEIN
Paelopatides30600SPHINGOMYELINASE FAMILY MEMBER
Paelopatides30601ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides30602ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides30603PROTEIN CBG26694
Paelopatides30604BONUS, ISOFORM C-RELATED
Paelopatides30605MAMMALIAN EPENDYMIN-RELATED PROTEIN 1
Paelopatides30606MAMMALIAN EPENDYMIN-RELATED PROTEIN 1
Paelopatides30607-
Paelopatides30608-
Paelopatides30609P-SELECTIN GLYCOPROTEIN LIGAND-1
Paelopatides30610-
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