About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33044-
Paelopatides33046-
Paelopatides33047CYTOKINE RECEPTOR
Paelopatides33048NG5
Paelopatides33049-
Paelopatides33050SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
Paelopatides33051EPM2A-INTERACTING PROTEIN 1
Paelopatides33052NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides33053PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
Paelopatides33054-
Paelopatides33055RETROTRANSPOSON
Paelopatides33056PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides33057-
Paelopatides33058ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides33059-
Paelopatides33060ACROSIN-RELATED
Paelopatides33061REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides33062-
Paelopatides33063EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides33064REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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