About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33065EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides33066REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides33067-
Paelopatides33073ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED
Paelopatides33074COILED-COIL DOMAIN-CONTAINING 166
Paelopatides33075HEAT SHOCK PROTEIN 70KDA
Paelopatides33076HEAT SHOCK PROTEIN 70KDA
Paelopatides33077UBIQUITIN THIOESTERASE
Paelopatides33079ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27
Paelopatides33080ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27
Paelopatides33081-
Paelopatides33082L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides33083-
Paelopatides33084REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides33085APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides33086TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides33087FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides33088SYNDROMES PUTATIVE CHAPERONIN-RELATED
Paelopatides33089-
Paelopatides33090-
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