About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33091GTP-BINDING
Paelopatides33092GTP-BINDING
Paelopatides33093DNA HELICASE RECQ FAMILY MEMBER
Paelopatides33094-
Paelopatides33095-
Paelopatides33096RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides33097-
Paelopatides33098PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides33099ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides33100-
Paelopatides33101AGAP008648-PA
Paelopatides33102MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
Paelopatides33103ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides33104DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL
Paelopatides33105PRENYLTRANSFERASES
Paelopatides33106PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides33107PIRNA BIOGENESIS PROTEIN EXD1
Paelopatides33108-
Paelopatides33109P PROTEIN
Paelopatides33110PROTEIN CBG26694
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