About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32959MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN
Paelopatides32960G PROTEIN-COUPLED RECEPTOR-RELATED
Paelopatides32961PROTEIN, PUTATIVE-RELATED
Paelopatides32962PROTEIN CBG26694
Paelopatides32963PROTEIN CBG26694
Paelopatides32964CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32965GH08155P
Paelopatides32966SULFOTRANSFERASE DOMAIN-CONTAINING PROTEIN
Paelopatides32967ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides32968GEO11136P1-RELATED
Paelopatides32969-
Paelopatides32970CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32971GEO11136P1-RELATED
Paelopatides32972RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides32973INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides32974AGAP001331-PA-RELATED
Paelopatides32975MUSKELIN
Paelopatides32976MALE FERTILITY FACTOR KL5
Paelopatides3297726S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3
Paelopatides32978VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
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