About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33423ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides33424HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides33425-
Paelopatides33426-
Paelopatides33427BAX INHIBITOR-RELATED
Paelopatides33428TUBERIN
Paelopatides33429TUBERIN
Paelopatides33430-
Paelopatides33431BETA LACTAMASE DOMAIN
Paelopatides33432HIGH MOBILITY GROUP PROTEIN DSP1
Paelopatides33433RIKEN CDNA D130052B06 GENE
Paelopatides33434DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4
Paelopatides33435LEUCOKININ RECEPTOR-RELATED
Paelopatides33436-
Paelopatides33437FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides33438-
Paelopatides33439PROTEIN EVA-1
Paelopatides33440DEUBIQUITINATING PROTEIN VCIP135
Paelopatides33441ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides33442PROTEIN CBG26694
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