About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33443-
Paelopatides33444SI:CH211-108C17.2-RELATED-RELATED
Paelopatides33445NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides33446ENDONUCLEASE
Paelopatides33447GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides33448PROTEIN CBG26694
Paelopatides33449REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides33450-
Paelopatides33451GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides33452TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides33453MICROTUBULE ASSOCIATED PROTEIN XMAP215
Paelopatides33454-
Paelopatides33455HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides33456OPSIN
Paelopatides33457G PROTEIN-COUPLED RECEPTOR-RELATED
Paelopatides33458CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Paelopatides33459-
Paelopatides33460-
Paelopatides33461SI:CH211-108C17.2-RELATED-RELATED
Paelopatides33462ZGC:195170
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