About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33483RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides33484FI04643P-RELATED
Paelopatides33485OVOCHYMASE-RELATED
Paelopatides33486PROTEIN CBG26694
Paelopatides33487PROTEIN CBG26694
Paelopatides33488VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Paelopatides33489SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
Paelopatides33490ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides33491RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides33492RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides33493NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides33494-
Paelopatides33495PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG
Paelopatides33496PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG
Paelopatides33497PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG
Paelopatides33498UNCHARACTERIZED
Paelopatides33499PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Paelopatides33500CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10
Paelopatides33501MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides33502GEO11136P1-RELATED
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