About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35201-
Paelopatides35202DNA HELICASE RECQ FAMILY MEMBER
Paelopatides35203AP ENDONUCLEASE
Paelopatides35204LIM DOMAIN KINASE 1
Paelopatides35205THIOREDOXIN PEROXIDASE
Paelopatides35206-
Paelopatides35207PRE-MRNA SPLICING FACTOR
Paelopatides35208PRE-MRNA SPLICING FACTOR
Paelopatides35209PRE-MRNA SPLICING FACTOR
Paelopatides35210-
Paelopatides35211DENN DOMAIN-CONTAINING
Paelopatides35212GTP-BINDING PROTEIN ALPHA SUBUNIT
Paelopatides35213-
Paelopatides35214SARCOGLYCAN
Paelopatides35215REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35216GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN
Paelopatides35217DNA PRIMASE LARGE SUBUNIT
Paelopatides35218FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides35219-
Paelopatides35220PHD-TYPE DOMAIN-CONTAINING PROTEIN
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