About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35121-
Paelopatides35122EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides35123SHORT-CHAIN DEHYDROGENASE/REDUCTASE
Paelopatides35124PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
Paelopatides35125PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides35126-
Paelopatides35127UNCHARACTERIZED
Paelopatides35128E3 UBIQUITIN-PROTEIN LIGASE TRIM
Paelopatides35129B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides35130B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides35131ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides35132REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35133T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides35134CYTOCHROME P450 FAMILY 4
Paelopatides35135CYTOCHROME P450 FAMILY 4
Paelopatides35136ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides35137-
Paelopatides35138F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides35139-
Paelopatides35140SI:CH211-262H13.3-RELATED-RELATED
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