About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35221PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides35222RETROTRANSPOSON
Paelopatides35223TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATED
Paelopatides35224WD40 REPEAT PROTEIN
Paelopatides35225RNA PROCESSING PROTEIN LD23810P
Paelopatides35226-
Paelopatides35227-
Paelopatides35228-
Paelopatides35229RIBULOSE-5-PHOSPHATE-3-EPIMERASE
Paelopatides35230-
Paelopatides35231ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides35232-
Paelopatides35233REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35234LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides35235REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35237FUMARATE HYDRATASE-RELATED
Paelopatides35238-
Paelopatides35239REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35240-
Paelopatides35241PHOSPHOLIPASE A-2-ACTIVATING PROTEIN
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