About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36112PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT
Paelopatides36113RING ZINC FINGER PROTEIN
Paelopatides36114GLUTAREDOXIN FAMILY MEMBER
Paelopatides36115-
Paelopatides36116PERIAXIN/AHNAK
Paelopatides36117ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Paelopatides36118ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Paelopatides36119ALPHA CATENIN
Paelopatides36120WD40 REPEAT DOMAIN 95
Paelopatides36121-
Paelopatides36122-
Paelopatides36123PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides36124ENDONUCLEASE
Paelopatides36126CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT
Paelopatides36127GM2 GANGLIOSIDE ACTIVATOR PROTEIN
Paelopatides36128TRANSMEMBRANE PROTEIN HTP-1 RELATED
Paelopatides36129PROGESTERONE-INDUCED BLOCKING FACTOR 1
Paelopatides36130NUDIX HYDROLASE RELATED
Paelopatides36131AF4/FMR2 FAMILY MEMBER
Paelopatides36133-
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