About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36751GH3 DOMAIN-CONTAINING PROTEIN
Paelopatides36752-
Paelopatides36753-
Paelopatides36754PROTEIN SIDEKICK
Paelopatides36755-
Paelopatides36756QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2
Paelopatides36757L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides36758RAB GDP/GTP EXCHANGE FACTOR
Paelopatides36759RNA HELICASE
Paelopatides36760OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Paelopatides36761REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides36762-
Paelopatides36763ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides36764PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides36765-
Paelopatides36766ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4
Paelopatides36767SNRNP CORE PROTEIN FAMILY MEMBER
Paelopatides36768UNCHARACTERIZED
Paelopatides36769MICROSOMAL PROSTAGLANDIN E SYNTHASE-2
Paelopatides36770TORSIN-1A-INTERACTING PROTEIN
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