About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36771AUTOPHAGY PROTEIN 12
Paelopatides36772WD-40 REPEAT PROTEIN
Paelopatides36773-
Paelopatides36774-
Paelopatides36775CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides36776CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides36777-
Paelopatides36778FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides36779BETA-LACTAMASE-RELATED
Paelopatides36780CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides36781CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides36782REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides36783UNCHARACTERIZED
Paelopatides36784CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
Paelopatides36785PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides36786REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides36787ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides36788-
Paelopatides36789F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides36790-
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