About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37689THYMIDYLATE SYNTHASE 1
Paelopatides37690DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides37691ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides37692-
Paelopatides37693GAMMA TUBULIN COMPLEX PROTEIN
Paelopatides37694KELCH DOMAIN-CONTAINING PROTEIN 10
Paelopatides37695REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides37696SEGMENT POLARITY PROTEIN DISHEVELLED
Paelopatides37697RETROTRANSPOSON
Paelopatides37698INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides37699ENZYMATIC POLYPROTEIN-RELATED
Paelopatides37700INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides37701-
Paelopatides37702OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides37703-
Paelopatides37704ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides37705RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides37706RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides37707-
Paelopatides37708NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 13
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