About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37567-
Paelopatides37568-
Paelopatides37569PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides37570RETROTRANSPOSON
Paelopatides37571ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides37572SCAVENGER RECEPTOR CLASS F
Paelopatides37573ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides37574-
Paelopatides37575-
Paelopatides37576-
Paelopatides37577REVERSE TRANSCRIPTASES
Paelopatides37578PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides37579-
Paelopatides37580SORTING NEXIN 17 AND 27
Paelopatides37581-
Paelopatides37582-
Paelopatides37583-
Paelopatides37584NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 6
Paelopatides37585F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED
Paelopatides37586ATP-DEPENDENT DNA HELICASE
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