About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37669POL PROTEIN
Paelopatides37670PROTEIN CBG26694
Paelopatides37671-
Paelopatides37672REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides37673TESTIS-EXPRESSED PROTEIN 36
Paelopatides37674REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides37675MACROPHAGE ERYTHROBLAST ATTACHER-RELATED
Paelopatides37676RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED
Paelopatides37677RIBONUCLEASE H2 SUBUNIT A
Paelopatides37678RIBONUCLEASE H2 SUBUNIT A
Paelopatides37679ASPARTATE AMINOTRANSFERASE
Paelopatides37680-
Paelopatides37681-
Paelopatides37682HORMA DOMAIN-CONTAINING PROTEIN 1
Paelopatides37683TETRASPANIN
Paelopatides37684TETRASPANIN
Paelopatides37685ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides37686NXPE FAMILY MEMBER
Paelopatides37687TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
Paelopatides37688-
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